PHATRDRAFT_27118 ubiquitin extension protein (Ubiquitin)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_27118 chr_7 ubiquitin extension protein (Ubiquitin) 467706 468173 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0146

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0209
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ubiquitin Ubiquitin; Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric... cl00155 158.88 1.18E-50 1 - 76 specific 176398
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 158.88 1.18E-50 1 - 76 superfamily 260222
Ribosomal_S27 Ribosomal protein S27a; This family of ribosomal proteins consists mainly of the 40S ribosomal... cl00876 63.2494 3.38E-14 103 - 145 specific 250734
Ribosomal_S27 superfamily Ribosomal protein S27a; This family of ribosomal proteins consists mainly of the 40S ribosomal... - 63.2494 3.38E-14 103 - 145 superfamily 260673

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40669 Not available 267726 263500 434266 Not available AT1G23410.1 355036

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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