PHATRDRAFT_28482 cleavage and polyadenylation specific factor73kda (YSH1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_28482 chr_12 cleavage and polyadenylation specific factor73kda (YSH1) 368477 370470 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0395

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Beta-Casp Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... cl12567 128.812 3.48E-35 242 - 365 specific 214983
Beta-Casp superfamily Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... - 128.812 3.48E-35 242 - 365 superfamily 264703
CPSF73-100_C superfamily Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; This is the C-... - 77.3444 2.73E-16 478 - 602 superfamily 264965
Lactamase_B Metallo-beta-lactamase superfamily; Apart from the beta-lactamases a number of other proteins... cl00446 74.127 2.94E-15 19 - 198 specific 214854
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 74.127 2.94E-15 19 - 198 superfamily 260426
RMMBL superfamily RNA-metabolizing metallo-beta-lactamase; The metallo-beta-lactamase fold contains five sequence... - 47.4955 3.37E-07 381 - 417 superfamily 254257
RMMBL superfamily RNA-metabolizing metallo-beta-lactamase; The metallo-beta-lactamase fold contains five sequence... - 47.4955 3.37E-07 381 - 417 superfamily 254257
YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal... - 392.941 9.41E-131 5 - 455 multi-dom 224157

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33033 Not available 195229 236353 70636 Cre12.g498050.t1.2 AT1G61010.3 478942

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments