PHATRDRAFT_29958 u2 snrnp auxiliarysmall subunit (RRM_SF superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_29958	chr_19	u2 snrnp auxiliarysmall subunit (RRM_SF superfamily)	612716	613471	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0393

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0117	0.31	480 9100

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	155.985	6.56E-48	44 - 147	superfamily	266524
zf-CCCH		Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar).	cl11592	32.9124	0.0083447	14 - 39	specific	250023
zf-CCCH superfamily		Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar).	-	32.9124	0.0083447	14 - 39	superfamily	264437

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
270037		Not available	227931	163523	444106	Cre06.g250950.t1.2	AT1G27650.1	370516

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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