PHATRDRAFT_32841 sel1 domain protein repeat-containing protein (COG0790)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_32841 chr_2 sel1 domain protein repeat-containing protein (COG0790) 920344 921359 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0061

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0186
 0.24

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SEL1 Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences. cl02723 34.842 0.00301375 196 - 227 specific 214772
Sel1 superfamily Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats. - 34.842 0.00301375 196 - 227 superfamily 261423
COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] - 66.6063 7.38E-13 84 - 240 multi-dom 223861

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
7059 Not available 179181 225342 237001 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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