PHATRDRAFT_32976 cg13865-isoform a (COG0790)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_32976 chr_2 cg13865-isoform a (COG0790) 1230599 1231573 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0190
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SEL1 Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences. cl02723 33.3012 0.00940559 285 - 312 specific 214772
Sel1 superfamily Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats. - 33.3012 0.00940559 285 - 312 superfamily 261423
SEL1 Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences. cl02723 33.3012 0.00940559 285 - 312 specific 214772
Sel1 superfamily Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats. - 33.3012 0.00940559 285 - 312 superfamily 261423
COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] - 78.9327 3.48E-17 61 - 322 multi-dom 223861

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1649 Not available 226165 178157 Not available Not available Not available 486146

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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