PHATRDRAFT_3578 pseudouridylate synthase (PseudoU_synth_PUS1_PUS2)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_3578	chr_11	pseudouridylate synthase (PseudoU_synth_PUS1_PUS2)	132784	133662	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0243

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0230	0.25	25000 11000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth_PUS1_PUS2		Pseudouridine synthase, PUS1/ PUS2 like; This group consists of eukaryotic pseudouridine synthases...	cl00130	222.489	2.85E-71	2 - 287	specific	211335
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	222.489	2.85E-71	2 - 287	superfamily	260207
TruA		Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]	-	158.584	2.40E-46	1 - 292	multi-dom	223179

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
33985		Not available	183793	204461	Not available	Cre16.g691900.t1.2	AT1G20370.1	308307

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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