PHATRDRAFT_41351 atp-binding component of abc transporter (Uup)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_41351 chr_29 atp-binding component of abc transporter (Uup) 249747 251786 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0060

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0050
 0.33

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 157.225 5.64E-45 352 - 550 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 153.006 1.12E-42 19 - 263 superfamily 266551
ABC_cobalt_CbiO_domain1 First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC... cl17201 153.006 1.12E-42 19 - 263 specific 213192
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 153.006 1.12E-42 19 - 263 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 67.9875 8.15E-14 258 - 340 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 67.9875 8.15E-14 258 - 340 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 456.712 4.90E-153 35 - 562 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
260833 Not available 226627 320503 61142 Cre06.g265100.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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