PHATRDRAFT_42495 (Utp21 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42495 chr_1 (Utp21 superfamily) 214447 218148 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0243

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0230
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Utp21 superfamily Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is essential... - 115.459 3.26E-28 932 - 1162 superfamily 252441
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 50.7964 8.94E-07 325 - 526 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 50.7964 8.94E-07 325 - 526 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 58.9467 4.90E-09 325 - 852 multi-dom 225201
COG2319 FOG: WD40 repeat [General function prediction only] - 58.9467 4.90E-09 325 - 852 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268252 Not available 180852 182115 310412 Cre10.g466250.t1.2 AT4G04940.1 304396

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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