PHATRDRAFT_42585 zinc finger in n-recognin family protein (zf-UBR)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42585	chr_1	zinc finger in n-recognin family protein (zf-UBR)	503862	505196	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0205

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0002	0.43	470 780

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-UBR		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	cl19744	48.5203	1.76E-07	13 - 71	specific	251157
zf-UBR superfamily		Putative zinc finger in N-recognin (UBR box); This region is found in E3 ubiquitin ligases that...	-	48.5203	1.76E-07	13 - 71	superfamily	268097

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
25604		Not available	249809	285762	120554	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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