PHATRDRAFT_42712 ran-specific gtpase-activating protein (RanBD_family)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42712	chr_1	ran-specific gtpase-activating protein (RanBD_family)	867510	868404	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0143

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0014	0.30	68000 220000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RanBD_family		Ran-binding domain; The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these...	cl17171	143.195	2.93E-43	59 - 172	specific	241232
PH-like superfamily		Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and...	-	143.195	2.93E-43	59 - 172	superfamily	266526

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
37047		Not available	264091	299757	453068	Cre09.g394450.t1.2	AT2G30060.1	284057

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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