PHATRDRAFT_42822 (PHD)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42822	chr_1	(PHD)	1227886	1230842	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0064

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0031	0.36	0.0019 46000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PHD		PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner...	cl17445	67.1348	1.12E-13	56 - 102	specific	250011
PHD superfamily		PHD-finger; PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner...	-	67.1348	1.12E-13	56 - 102	superfamily	266687
DIRP superfamily		DIRP; DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway,...	-	59.6708	1.39E-10	520 - 618	superfamily	148285

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
261876		Not available	257121	154750	200992	Cre08.g380151.t1.1	AT3G01460.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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