PHATRDRAFT_43830 (Vps35 superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_43830	chr_3	(Vps35 superfamily)	161587	167196	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0446

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0002	0.43	470 780

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Vps35 superfamily		Vacuolar protein sorting-associated protein 35; Vacuolar protein sorting-associated protein (Vps)...	-	624.279	0	320 - 1296	superfamily	252074
PAP1 superfamily		Transcription factor PAP1; The transcription factor Pap1 regulates antioxidant-gene transcription...	-	39.5496	0.00549521	1503 - 1637	superfamily	254911

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
36337		Not available	213025	325242	467558	Cre01.g029650.t1.1	AT2G17790.1	547810

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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