PHATRDRAFT_44047 wd repeats and sof domain containing 1 (COG2319)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44047	chr_3	wd repeats and sof domain containing 1 (COG2319)	787940	789331	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0201

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0255	0.14	750 160

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	117.821	3.86E-30	65 - 371	superfamily	238121
Sof1 superfamily		Sof1-like domain; Sof1 is essential for cell growth and is a component of the nucleolar rRNA...	-	100.045	1.06E-25	372 - 459	superfamily	252419
COG2319		FOG: WD40 repeat [General function prediction only]	-	122.119	1.31E-30	65 - 373	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
269352		Not available	197135	241914	63613	Cre07.g318702.t1.1	AT4G28450.1	314636

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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