PHATRDRAFT_45251 pseudouridine synthase (PseudoU_synth_ScPUS7)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_45251	chr_6	pseudouridine synthase (PseudoU_synth_ScPUS7)	612438	614525	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0204

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0179	0.41	2.8 9.5

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth_ScPUS7		Pseudouridine synthase, TruD family; This group consists of eukaryotic pseudouridine synthases...	cl00130	288.742	1.10E-90	203 - 650	specific	211341
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	288.742	1.10E-90	203 - 650	superfamily	260207

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22356		Not available	179163	246475	203882	Cre01.g007651.t1.1	AT3G04820.1	293156

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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