22356 PseudoU_synth_ScPUS7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22356 chr_4 PseudoU_synth_ScPUS7 1545621 1548101 - PseudoU_synth_ScPUS7

Synonyms

NCBI ID Ensembl Genomes exon ID
7446156 Thaps22356.2, Thaps22356.3, Thaps22356.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0179
 0.28

Most Highly Correlated Transcripts

24429

PRMT5 superfamily
0.9383

5540

hypothetical protein
0.9234

24907

Sas10
0.9086

5794

hypothetical protein
0.9064

269917

TrmA
0.906

25434

PRK00142
0.9046

23513

COG1258
0.9031

29018

NMD3
0.9028

260748

AdoMet_MTases superfamily
0.9001

23336

SRP40_C superfamily
0.8993

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_ScPUS7 Pseudouridine synthase, TruD family; This group consists of eukaryotic pseudouridine synthases... cl00130 272.948 7.19E-84 292 - 739 specific 211341
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 272.948 7.19E-84 292 - 739 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45251 PHATRDRAFT_45251 179163 246475 243837 Cre01.g007651.t1.1 AT3G04820.1 293156

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0004730 GO:0008033 GO:0009982 GO:0042299 GO:0042300 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0042299

lupeol synthase activity

Details: 
Catalysis of the reaction: (S)-2,3-epoxysqualene = lupeol. This reaction is the cyclization of (S)-2,3-epoxysqualene (2,3-oxidosqualene) to lupeol.
GO Category: 
MF

GO:0042300

beta-amyrin synthase activity

Details: 
Catalysis of the reaction: (S)-2,3-epoxysqualene = beta-amyrin. This reaction is the cyclization and rearrangement of (S)-2,3-epoxysqualene (2,3-oxidosqualene) into beta-amyrin.
GO Category: 
MF

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