PHATRDRAFT_46865 (AlkA)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_46865	chr_11	(AlkA)	657196	658380	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0395

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0251	0.21	10000 89000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ENDO3c		endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase...	cl19066	78.8226	1.29E-17	154 - 342	specific	238013
ENDO3c superfamily		endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase...	-	78.8226	1.29E-17	154 - 342	superfamily	267419
AlkA		3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and...	-	123.316	2.75E-32	154 - 346	multi-dom	223200

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	237805	Not available	371630	Cre11.g476400.t1.1	AT1G75230.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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