PHATRDRAFT_47014 rna binding s1 domain protein (S1_like)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47014	chr_12	rna binding s1 domain protein (S1_like)	190673	192013	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0201

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0192	0.20	0.69 12

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	cl09927	68.561	1.38E-14	276 - 340	specific	238094
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	68.561	1.38E-14	276 - 340	superfamily	263921
TAP42 superfamily		TAP42-like family; The TOR signalling pathway activates a cell-growth program in response to...	-	37.2742	0.00537969	73 - 174	superfamily	252426

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22582		Not available	255158	323245	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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