PHATRDRAFT_47058 (Pumilio superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47058	chr_12	(Pumilio superfamily)	299249	301069	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0201

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0237	0.20	120 170

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pumilio superfamily		Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)...	-	66.0759	4.74E-12	95 - 207	superfamily	153420
CPL superfamily		CPL (NUC119) domain; This C terminal domain is fund in Penguin-like proteins associated with...	-	50.1858	1.32E-07	416 - 535	superfamily	149284

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
23354		Not available	214158	196086	456145	Cre12.g528950.t1.1	AT3G16810.1	554415

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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