PHATRDRAFT_47365 at3g06980 f17a9_13 (DEXDc superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47365 chr_13 at3g06980 f17a9_13 (DEXDc superfamily) 402870 404681 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0045
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 101.16 5.00E-25 398 - 533 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 101.16 5.00E-25 398 - 533 superfamily 238034
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 161.113 8.86E-46 160 - 358 superfamily 266587
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 122.601 4.89E-32 163 - 367 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
8997 Not available 214400 197814 Not available Not available AT3G06980.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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