PHATRDRAFT_47947 glutamate-rich wd repeat containing 1 (COG2319)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47947 chr_15 glutamate-rich wd repeat containing 1 (COG2319) 524237 525742 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0200

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0226
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 70.4416 1.00E-13 205 - 445 superfamily 238121
CAF1C_H4-bd superfamily Histone-binding protein RBBP4 or subunit C of CAF1 complex; The CAF-1 complex is a conserved... - 65.7181 1.98E-13 97 - 162 superfamily 256943
CAF1C_H4-bd superfamily Histone-binding protein RBBP4 or subunit C of CAF1 complex; The CAF-1 complex is a conserved... - 65.7181 1.98E-13 97 - 162 superfamily 256943
COG2319 FOG: WD40 repeat [General function prediction only] - 92.0739 3.36E-20 197 - 496 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
39022 Not available 138485 197614 215379 Cre17.g724850.t1.2 AT2G19540.1 313771

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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