PHATRDRAFT_48411 ribosomal protein s2 (rpsE_arch)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_48411	chr_17	ribosomal protein s2 (rpsE_arch)	376485	377279	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0151

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0126	0.29	160 17000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ribosomal_S5 superfamily		Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, N-terminal domain.	-	100.438	5.19E-27	86 - 152	superfamily	144065
Ribosomal_S5 superfamily		Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, N-terminal domain.	-	100.438	5.19E-27	86 - 152	superfamily	144065
Ribosomal_S5_C superfamily		Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, C-terminal domain.	-	89.0163	1.20E-22	169 - 241	superfamily	252121
Ribosomal_S5_C superfamily		Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, C-terminal domain.	-	89.0163	1.20E-22	169 - 241	superfamily	252121
rpsE_arch		ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type); This model finds eukaryotic...	-	298.614	7.41E-102	41 - 246	multi-dom	233235

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
24262		Not available	211493	307698	240177	Cre01.g039250.t2.1	AT1G58684.1	494630

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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