PHATRDRAFT_48786 tpr-repeat containing protein (TPR)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48786 chr_19 tpr-repeat containing protein (TPR) 235859 238738 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0378

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0222
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 54.6936 5.54E-09 475 - 558 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 54.6936 5.54E-09 475 - 558 superfamily 238112
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 46.9916 9.24E-07 247 - 280 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 46.9916 9.24E-07 247 - 280 superfamily 261387
TPR_11 TPR repeat; TPR repeat. - 38.4487 0.00108979 424 - 489 multi-dom 257739
TPR_11 TPR repeat; TPR repeat. - 38.4487 0.00108979 424 - 489 multi-dom 257739
TPR_16 Tetratricopeptide repeat; Tetratricopeptide repeat. - 38.4404 0.00105261 396 - 451 multi-dom 257757

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269141 Not available 167886 288074 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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