PHATRDRAFT_48955 (Cation_efflux superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48955 chr_20 (Cation_efflux superfamily) 135730 142061 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0096

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0218
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Cation_efflux superfamily Cation efflux family; Members of this family are integral membrane proteins, that are found to... - 101.946 5.36E-23 103 - 442 superfamily 260348
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 76.145 2.26E-16 1511 - 1544 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 76.145 2.26E-16 1511 - 1544 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 76.145 2.26E-16 1511 - 1544 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 76.145 2.26E-16 1511 - 1544 superfamily 202712
F-box-like F-box-like; This is an F-box-like family. cl02535 50.2032 1.94E-07 1801 - 1833 specific 257418
F-box superfamily F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-... - 50.2032 1.94E-07 1801 - 1833 superfamily 261329
CITED CITED; CITED, CBP/p300-interacting transactivator with ED-rich tail, are characterized by a... - 42.9556 0.000250248 1634 - 1737 multi-dom 252624

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
31951 Not available 164769 153478 42242 Cre03.g160800.t1.2 AT3G58060.1 552775

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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