PHATRDRAFT_49526 (SANT)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49526	chr_22	(SANT)	512484	519161	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0096

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0147	0.26	220 7400

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SANT		'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain...	cl17250	57.9706	3.67E-10	119 - 162	specific	238096
SANT superfamily		'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain...	-	57.9706	3.67E-10	119 - 162	superfamily	266586
DUF3639 superfamily		Protein of unknown function (DUF3639); This domain family is found in eukaryotes, and is...	-	39.3454	0.000604816	1276 - 1302	superfamily	256992
COG2319		FOG: WD40 repeat [General function prediction only]	-	40.8423	0.0023608	620 - 937	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	513915

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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