PHATRDRAFT_49568 (Aa_trans superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49568	chr_23	(Aa_trans superfamily)	70481	72432	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0393

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0205	0.32	0.32 1300

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Aa_trans superfamily		Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid...	-	177.875	1.28E-49	165 - 603	superfamily	266708
SdaC		Amino acid permeases [Amino acid transport and metabolism]	-	74.9952	1.21E-14	172 - 602	multi-dom	223884

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
262016		Not available	149326	320041	Not available	Not available	Not available	522524

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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