PHATRDRAFT_50310 u2-associated sr140 protein (RRM_SF superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50310 chr_28 u2-associated sr140 protein (RRM_SF superfamily) 260973 263261 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0330

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 131.617 2.57E-36 113 - 198 superfamily 266524
SWAP Suppressor-of-White-APricot splicing regulator; domain present in regulators which are responsible... cl02715 60.2937 2.31E-11 260 - 317 specific 197818
Surp superfamily Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-... - 60.2937 2.31E-11 260 - 317 superfamily 261419
VHS_ENTH_ANTH superfamily VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain.... - 43.4193 2.03E-05 418 - 543 superfamily 261334

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35323 Not available 183475 264075 437368 Cre03.g158150.t1.1 AT5G25060.1 528320

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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