35323 RRM_SR140
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35323 chr_7 RRM_SR140 897739 900052 - RRM_SR140

Synonyms

NCBI ID Ensembl Genomes exon ID
7449239 Thaps35323.4, Thaps35323.1, Thaps35323.2, Thaps35323.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0364

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0073
 0.47

Most Highly Correlated Transcripts

3163

SET
0.8812

263599

COG3899
0.8811

31075

PDEase_I
0.8756

2525

MCD superfamily
0.8707

262956

WASH-7_mid
0.8657

14315

FAD_binding_7
0.8642

3375

(Tp_Myb2R2) regulator [Rayko]
0.8585

10191

SUL1
0.8581

263610

COG3899
0.8557

14378

S_TKc
0.8505

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SR140 RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins; This subgroup... cl17169 151.648 7.62E-44 119 - 204 specific 240669
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 151.648 7.62E-44 119 - 204 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50310 PHATRDRAFT_50310 183475 264075 437368 Cre03.g158150.t1.1 AT5G25060.1 528320

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003723 GO:0006396 GO:0003676 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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