PHATRDRAFT_50635 (Alginate_lyase)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_50635	chr_33	(Alginate_lyase)	36985	39516	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0097

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0042	0.42	4.5 570

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Alginate_lyase		Alginate lyase; This family contains several bacterial alginate lyase proteins. Alginate is a...	cl00179	170.694	1.35E-47	474 - 770	specific	253191
AlgLyase superfamily		Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-...	-	170.694	1.35E-47	474 - 770	superfamily	260237

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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