PHATRDRAFT_52174 dna topoisomerase ii (PLN03128)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_52174 chr_12 dna topoisomerase ii (PLN03128) 566051 569924 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0097

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0167
 0.14

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOP4c superfamily DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC... - 428.909 2.21E-138 683 - 1143 superfamily 238111
TOP4c superfamily DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC... - 428.909 2.21E-138 683 - 1143 superfamily 238111
TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type... cl00718 227.953 3.12E-69 436 - 556 specific 173785
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 227.953 3.12E-69 436 - 556 superfamily 260587
TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type... cl02783 206.369 4.09E-61 249 - 399 specific 239563
TopoII_MutL_Trans superfamily MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-... - 206.369 4.09E-61 249 - 399 superfamily 261445
HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... cl00075 39.5522 0.000550975 55 - 145 specific 238030
HATPase_c superfamily Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... - 39.5522 0.000550975 55 - 145 superfamily 260175
PLN03128 DNA topoisomerase 2; Provisional - 1969.93 0 3 - 1143 multi-dom 215593

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
36420 Not available 145893 Not available 451325 Cre01.g009250.t1.1 AT3G23890.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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