PHATRDRAFT_52285 cg1957-isoform a (YSH1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_52285 chr_14 cg1957-isoform a (YSH1) 776072 779218 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0064

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Beta-Casp Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... cl12567 86.0544 2.16E-19 287 - 404 specific 214983
Beta-Casp superfamily Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... - 86.0544 2.16E-19 287 - 404 superfamily 264703
CPSF100_C superfamily Cleavage and polyadenylation factor 2 C-terminal; This family lies at the C-terminus of many fungal... - 67.6648 5.88E-13 931 - 998 superfamily 257636
YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal... - 137.554 1.53E-34 22 - 405 multi-dom 224157

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264081 Not available 175955 193992 Not available Cre12.g487600.t1.1 AT5G23880.1 552782

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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