10136 PRK00409
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10136 chr_15 PRK00409 364243 368879 + PRK00409

Synonyms

NCBI ID Ensembl Genomes exon ID
7451887 Thaps10136.2, Thaps10136.1, Thaps10136.4, Thaps10136.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0031

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0092
 0.42

Most Highly Correlated Transcripts

bd841

(bd841) Abhydrolase_6
0.8958

10881

hypothetical protein
0.8501

7695

SPRY_RanBP_like
0.8394

bd874

(bd874) NA
0.8339

262824

COG4581
0.8336

8414

NA
0.8244

25498

E3_UbLigase_R4 superfamily
0.8239

270048

Peptidase_M14_like superfamily
0.8219

11664

DUF3510
0.8192

8885

DUF3510
0.8173

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 237.146 4.18E-71 744 - 944 superfamily 266551
PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed - 418.461 4.76E-129 485 - 1279 multi-dom 234750

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47730 PHATRDRAFT_47730 179483 317588 466079 Cre01.g040350.t1.1 AT1G65070.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003684 GO:0005524 GO:0006298 GO:0006259 -

GO:0003684

damaged DNA binding

Details: 
Interacting selectively and non-covalently with damaged DNA.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006298

mismatch repair

Details: 
A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO Category: 
BP

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

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