10266 PelA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10266 chr_15 PelA 763712 765077 - PelA

Synonyms

NCBI ID Ensembl Genomes exon ID
7443970 Thaps10266.2, Thaps10266.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0253

Most Highly Correlated Transcripts

13448

Sec1
0.9102

4108

hypothetical protein
0.9055

34590

nt_trans superfamily
0.8966

21220

KU superfamily
0.8872

12836

EEP superfamily
0.8837

12899

AAA
0.878

16295

FBPase
0.8745

5066

hypothetical protein
0.861

5519

hypothetical protein
0.8586

1367

nuc_hydro superfamily
0.8577

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
eRF1_1 superfamily eRF1 domain 1; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 132.721 4.49E-37 1 - 132 superfamily 251974
eRF1_1 superfamily eRF1 domain 1; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 132.721 4.49E-37 1 - 132 superfamily 251974
eRF1_3 superfamily eRF1 domain 3; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 119.193 1.06E-32 271 - 370 superfamily 251976
eRF1_3 superfamily eRF1 domain 3; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 119.193 1.06E-32 271 - 370 superfamily 251976
eRF1_2 superfamily eRF1 domain 2; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 96.2039 4.39E-24 137 - 268 superfamily 251975
eRF1_2 superfamily eRF1 domain 2; The release factor eRF1 terminates protein biosynthesis by recognizing stop codons... - 96.2039 4.39E-24 137 - 268 superfamily 251975
PelA Predicted RNA-binding proteins [General function prediction only] - 291.134 8.72E-95 1 - 371 multi-dom 224454

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24748 PHATRDRAFT_24748 259341 25321 Not available Cre09.g388615.t1.1 AT4G27650.1 307605

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0005634 GO:0006412 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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