10292 2A1904
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10292 chr_15 2A1904 834743 837151 - 2A1904

Synonyms

NCBI ID Ensembl Genomes exon ID
7443984 Thaps10292.3, Thaps10292.2, Thaps10292.4, Thaps10292.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0432

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0031
 0.36

Most Highly Correlated Transcripts

bd951

(bd951) NA
0.8837

bd950

(bd950) NA
0.8509

bd1983

(bd1983) RecA-like_NTPases superfamily
0.838

270222

0.8056

bd439

(bd439) POLBc_alpha
0.7953

bd890

(bd890) NA
0.7932

bd758

(bd758) NA
0.7928

bd843

(bd843) NA
0.788

bd1757

(bd1757) NA
0.7856

bd211

(bd211) Maf_Ham1 superfamily
0.7835

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 74.946 8.96E-16 60 - 200 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 74.946 8.96E-16 60 - 200 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 74.946 8.96E-16 60 - 200 superfamily 250805
Na_Ca_ex superfamily Sodium/calcium exchanger protein; This is a family of sodium/calcium exchanger integral membrane... - 74.946 8.96E-16 60 - 200 superfamily 250805
2A1904 K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying... - 168.25 1.26E-43 40 - 683 multi-dom 233191

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1680 PHATRDRAFT_bd1680 225278 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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