10683 LSm7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10683 chr_17 LSm7 411984 412806 + LSm7

Synonyms

NCBI ID Ensembl Genomes exon ID
7442126 Thaps10683.3, Thaps10683.1, Thaps10683.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0430

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8918

25182

hypothetical protein
0.8906

7151

hypothetical protein
0.8721

25279

TCP1_zeta
0.8677

38707

Aldolase_Class_I superfamily
0.865

29469

hypothetical protein
0.8639

270087

WD40
0.862

22276

Gar1
0.8604

22596

PLN02296
0.8596

261607

IF4E
0.8581

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm7 Like-Sm protein 7; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 155.436 1.24E-49 32 - 120 specific 212476
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 155.436 1.24E-49 32 - 120 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8840 PHATRDRAFT_8840 272456 307277 49097 Cre03.g164101.t1.1 AT2G03870.1 334991

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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