22276 Gar1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22276 chr_4 Gar1 1152846 1154253 - Gar1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

268296

(RM12) Ribosomal_L7_L12
0.9257

36007

Aldolase_II superfamily
0.9217

21491

hypothetical protein
0.916

7151

hypothetical protein
0.9129

23356

Gst
0.9114

30691

AdoMet_MTases
0.9073

269925

AAA_12 superfamily
0.9049

38472

HA2
0.9029

35682

Prefoldin superfamily
0.8983

42621

HisS
0.8977

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gar1 Gar1/Naf1 RNA binding region; Gar1 is a small nucleolar RNP that is required for pre-mRNA... cl01285 105.061 2.44E-28 33 - 131 specific 252577
Gar1 superfamily Gar1/Naf1 RNA binding region; Gar1 is a small nucleolar RNP that is required for pre-mRNA... - 105.061 2.44E-28 33 - 131 superfamily 260872

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_7349 PHATRDRAFT_7349 267895 261289 218353 Cre13.g567850.t1.2 AT5G18180.1 302836

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0006364 GO:0007046 GO:0019843 GO:0030532 -

GO:0006364

rRNA processing

Details: 
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO Category: 
BP

GO:0007046

NA

Details: 
NA
GO Category: 
NA

GO:0019843

rRNA binding

Details: 
Interacting selectively and non-covalently with ribosomal RNA.
GO Category: 
MF

GO:0030532

small nuclear ribonucleoprotein complex

Details: 
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
GO Category: 
CC

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