10699 Chorein_NThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10699	chr_17	Chorein_N	440845	450187	-	Chorein_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442134	Thaps10699.3, Thaps10699.4, Thaps10699.2, Thaps10699.1, Thaps10699.5, Thaps10699.6

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0420

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0010	0.38	14000000 370

Most Highly Correlated Transcripts

bd415 (bd415) arom_aa_hydroxylase superfamily 0.9566	bd1841 (bd1841) CAP10 superfamily 0.9097	bd410 (bd410) HNHc 0.9089	bd643 (bd643) NA 0.9051	bd885 (bd885) NA 0.8766	bd690 (bd690) NA 0.8749
5090 hypothetical protein 0.871	bd1954 (bd1954) NA 0.8664	bd1934 (bd1934) NA 0.8553	25102 hypothetical protein 0.8483

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chorein_N superfamily		N-terminal region of Chorein, a TM vesicle-mediated sorter; Although mutations in the full-length...	-	70.6605	1.25E-13	3 - 90	superfamily	257171
Chorein_N superfamily		N-terminal region of Chorein, a TM vesicle-mediated sorter; Although mutations in the full-length...	-	70.6605	1.25E-13	3 - 90	superfamily	257171

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	206332	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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