10876 BRCT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10876 chr_18 BRCT 356446 358693 - BRCT

Synonyms

NCBI ID Ensembl Genomes exon ID
7442971 Thaps10876.3, Thaps10876.2, Thaps10876.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0154

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0289
 0.38

Most Highly Correlated Transcripts

bd211

(bd211) Maf_Ham1 superfamily
0.8524

bd951

(bd951) NA
0.8406

bd446

(bd446) HrpA
0.8391

bd668

(bd668) NA
0.8386

268650

(APB2) PTZ00429
0.8369

23616

Peptidase_A22B superfamily
0.8346

bd529

(bd529) SNF2_N
0.831

260936

HCO3_cotransp superfamily
0.8301

bd890

(bd890) NA
0.8274

23013

Trs65
0.8262

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within... cl00038 62.7242 4.26E-12 538 - 609 specific 237994
BRCT superfamily Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within... - 62.7242 4.26E-12 538 - 609 superfamily 260149

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42968 PHATRDRAFT_42968 263314 Not available 233298 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005622 GO:0003677 GO:0005634 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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