11011 Dcm
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11011 chr_18 Dcm 682027 684243 + Dcm

Synonyms

NCBI ID Ensembl Genomes exon ID
7450888 Thaps11011.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0215

Most Highly Correlated Transcripts

5066

hypothetical protein
0.8586

7810

hypothetical protein
0.8407

21304

hypothetical protein
0.84

23217

hypothetical protein
0.8327

8562

hypothetical protein
0.8325

22153

DnaJ
0.8315

4512

hypothetical protein
0.8304

7696

2_5_RNA_ligase2
0.8297

3408

FANCL_C superfamily
0.8278

3653

hypothetical protein
0.826

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] cl19095 171.846 8.30E-48 407 - 729 specific 223348
Cyt_C5_DNA_methylase superfamily Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many... - 171.846 8.30E-48 407 - 729 superfamily 267448

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 250079 285042 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003677 GO:0006306 GO:0003886 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006306

DNA methylation

Details: 
The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
GO Category: 
BP

GO:0003886

DNA (cytosine-5-)-methyltransferase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine.
GO Category: 
MF

Add comment

Log in to post comments