11109 Na_H_ExchangerThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11109	chr_19a_19	Na_H_Exchanger	159196	162424	+	Na_H_Exchanger

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446273	Thaps11109.3, Thaps11109.5, Thaps11109.4, Thaps11109.2, Thaps11109.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0169

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0005	0.39	0.000011 0.6

Most Highly Correlated Transcripts

2058 hypothetical protein 0.7085	11255 hypothetical protein 0.6552	23800 ANK 0.6543	269690 (Tp_Hox1) regulator [Rayko] 0.6535	7395 (Tp_HSF_2.5k) HSF_DNA-bind superfamily 0.6289	10847 Aha1_N superfamily 0.6259
34541 MgtA 0.6204	263409 Chorismate_bind superfamily 0.6148	25701 hypothetical protein 0.6118	35611 PLN00158 0.6091

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Na_H_Exchanger		Sodium/hydrogen exchanger family; Na/H antiporters are key transporters in maintaining the pH of...	cl00454	194.368	1.49E-54	243 - 623	specific	250283
TM_PBP1_branched-chain-AA_like superfamily		Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC...	-	194.368	1.49E-54	243 - 623	superfamily	260432

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44889	PHATRDRAFT_44889	Not available	Not available	Not available	Not available	AT4G23700.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

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