11182 PLN02545
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11182 chr_19a_19 PLN02545 366570 367623 - PLN02545

Synonyms

NCBI ID Ensembl Genomes exon ID
7449925 Thaps11182.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0458

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0054
 0.44

Most Highly Correlated Transcripts

5947

hypothetical protein
0.7333

35048

FBP_aldolase_IIA
0.7242

269316

fadE
0.7107

35710

(ACD1) SCAD_SBCAD
0.6939

bd807

(bd807) Cyt_b561_FRRS1_like
0.6795

264007

NAD_binding_10
0.6716

34809

(KCT1) PRK05790
0.6648

bd945

(bd945) COG3899
0.6564

bd954

(bd954) NA
0.6564

21155

hypothetical protein
0.6561

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
3HCDH_N superfamily 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin. - 243.223 2.00E-79 42 - 227 superfamily 251505
3HCDH_N superfamily 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin. - 243.223 2.00E-79 42 - 227 superfamily 251505
3HCDH superfamily 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; This family also includes lambda crystallin.... - 119.619 3.65E-33 229 - 324 superfamily 250086
3HCDH superfamily 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; This family also includes lambda crystallin.... - 119.619 3.65E-33 229 - 324 superfamily 250086
PLN02545 3-hydroxybutyryl-CoA dehydrogenase - 505.42 1.13E-180 38 - 338 multi-dom 215300

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_39681 PHATRDRAFT_39681 271968 242537 434981 Cre12.g534350.t1.2 AT3G15290.1 565338

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006631 GO:0016491 GO:0003857 -

GO:0006631

fatty acid metabolic process

Details: 
The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003857

3-hydroxyacyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H(+).
GO Category: 
MF

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