35710 (ACD1) SCAD_SBCAD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35710 chr_7 (ACD1) SCAD_SBCAD 1829357 1831180 - SCAD_SBCAD

Synonyms

NCBI ID Ensembl Genomes exon ID
7447201 Thaps35710.3, Thaps35710.1, Thaps35710.2, Thaps35710.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0440

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

bd874

(bd874) NA
0.876

269316

fadE
0.8618

bd841

(bd841) Abhydrolase_6
0.8591

bd392

(bd392) DEXDc
0.8004

bd1777

(bd1777) NA
0.7877

26365

fadJ
0.7798

261357

NAD_binding_8 superfamily
0.7566

260936

HCO3_cotransp superfamily
0.7484

2592

hypothetical protein
0.7483

9258

HP_PGM_like
0.7474

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases;... cl09933 586.927 0 104 - 483 specific 173847
ACAD superfamily Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA... - 586.927 0 104 - 483 superfamily 263927
CaiA Acyl-CoA dehydrogenases [Lipid metabolism] - 382.235 1.24E-128 102 - 487 multi-dom 224871

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25932 PHATRDRAFT_25932 209571 294406 437926 Not available Not available 489469

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003995 GO:0006118 GO:0016491 GO:0016937 GO:0017099 GO:0019109 -

GO:0003995

acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
GO Category: 
MF

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016937

short-branched-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue.
GO Category: 
MF

GO:0017099

very-long-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very long chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22.
GO Category: 
MF

GO:0019109

NA

Details: 
NA
GO Category: 
NA

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