11411 (CSN1) CS_ACL-C_CCL superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11411 chr_20 (CSN1) CS_ACL-C_CCL superfamily 29093 31078 + CS_ACL-C_CCL superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447798 Thaps11411.2, Thaps11411.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0383

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

268965

(acnB) PLN00094
0.867

270138

(GLNN) GSIII_N superfamily
0.8116

932

Choline_transpo superfamily
0.7934

26192

(GDH_2) PTZ00079
0.7733

8274

hypothetical protein
0.7612

25518

hypothetical protein
0.7569

21640

Iso_dh superfamily
0.7457

22565

UhpC
0.7439

34592

PLN03116
0.7388

269718

sucA
0.7332

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CS_ACL-C_CCL superfamily Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type... - 702.971 0 34 - 465 superfamily 260413
GltA Citrate synthase [Energy production and conversion] - 294.968 5.40E-95 62 - 457 multi-dom 223449

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30145 PHATRDRAFT_30145 224559 69957 467883 Cre12.g514750.t1.2 AT2G44350.2 542471

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0006092 GO:0046912 GO:0004108 GO:0005737 GO:0006099 -

GO:0006092

NA

Details: 
NA
GO Category: 
NA

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Details: 
Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer.
GO Category: 
MF

GO:0004108

citrate (Si)-synthase activity

Details: 
Catalysis of the reaction: acetyl-CoA + H2O + oxaloacetate = citrate + CoA, where the acetyl group is added to the si-face of oxaloacetate; acetyl-CoA thus provides the two carbon atoms of the pro-S carboxymethyl group.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006099

tricarboxylic acid cycle

Details: 
A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
GO Category: 
BP

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