11801 Methyltrans_RNA superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11801	chr_22	Methyltrans_RNA superfamily	491218	492148	-	Methyltrans_RNA superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443884	Thaps11801.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0189

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0033	0.48	0.000000021 0.013

Most Highly Correlated Transcripts

263864 0.9145	25420 hypothetical protein 0.8695	261823 FIG superfamily 0.8685	39941 PRK13357 0.8596	4745 hypothetical protein 0.8495	38736 S_TKc 0.8445
38707 Aldolase_Class_I superfamily 0.8407	1116 Methyltransf_16 superfamily 0.8406	36641 Aldolase_Class_I superfamily 0.8371	268443 SAICAR_synt_Sc 0.8357

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Methyltrans_RNA superfamily		RNA methyltransferase; RNA methyltransferases modify nucleotides during ribosomal RNA maturation in...	-	72.2235	2.46E-15	62 - 287	superfamily	260530

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	267296	186793	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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