12292 ABCC_MRP_domain2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12292 chr_13 ABCC_MRP_domain2 910017 914543 - ABCC_MRP_domain2

Synonyms

NCBI ID Ensembl Genomes exon ID
7450518 Thaps12292.2, Thaps12292.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0140

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0053
 0.56

Most Highly Correlated Transcripts

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8717

bd1941

(bd1941) NA
0.8648

bd1841

(bd1841) CAP10 superfamily
0.86

bd410

(bd410) HNHc
0.8519

bd737

(bd737) NA
0.845

bd690

(bd690) NA
0.8374

bd1959

(bd1959) NA
0.8243

bd1851

(bd1851) NA
0.8214

bd1808

(bd1808) NA
0.8196

bd1849

(bd1849) NA
0.8151

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCC_MRP_domain2 ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is... cl17201 331.766 2.18E-104 1203 - 1423 specific 213211
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 278.969 1.27E-85 557 - 769 superfamily 266551
ABCC_MRP_domain1 ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This... cl17201 278.969 1.27E-85 557 - 769 specific 213217
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 278.969 1.27E-85 557 - 769 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 88.8892 4.16E-19 277 - 514 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 88.8892 4.16E-19 277 - 514 superfamily 250039
MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] - 309.359 9.86E-92 919 - 1444 multi-dom 224055
CydD thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter... - 141.657 3.47E-35 282 - 765 multi-dom 234033

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
41211 Not available 184379 308787 77965 Cre16.g653601.t1.1 Not available 329963

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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