1283 (MTS2_1) TGT superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1283 chr_1 (MTS2_1) TGT superfamily 1129381 1130881 + TGT superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446831 Thaps1283.1, Thaps1283.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0196

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0274
 0.39

Most Highly Correlated Transcripts

23740

DUF72
0.9058

25162

hypothetical protein
0.8829

bd392

(bd392) DEXDc
0.8825

5624

hypothetical protein
0.8749

5586

Prenylcys_lyase superfamily
0.8736

261431

ABC_ATPase superfamily
0.8718

bd1837

(bd1837) NA
0.8693

8334

hypothetical protein
0.8674

bd874

(bd874) NA
0.8651

23573

hypothetical protein
0.8608

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TGT superfamily Queuine tRNA-ribosyltransferase; This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29,... - 455.821 5.65E-158 79 - 476 superfamily 267577
Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] - 375.832 1.15E-126 82 - 476 multi-dom 223420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 225713 294853 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006400 GO:0008479 GO:0008616 -

GO:0006400

tRNA modification

Details: 
The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
GO Category: 
BP

GO:0008479

queuine tRNA-ribosyltransferase activity

Details: 
Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine.
GO Category: 
MF

GO:0008616

queuosine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
GO Category: 
BP

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