12859 VacB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12859 chr_4 VacB 651487 654945 - VacB

Synonyms

NCBI ID Ensembl Genomes exon ID
7452622 Thaps12859.1, Thaps12859.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0395

Most Highly Correlated Transcripts

262157

E1_like_apg7
0.9251

21411

hypothetical protein
0.9026

268460

PolY superfamily
0.8978

4445

hypothetical protein
0.8948

263610

COG3899
0.8936

25600

hypothetical protein
0.8867

261279

(DGT) PLN03242
0.8864

20915

hypothetical protein
0.883

25457

hypothetical protein
0.8829

9364

hypothetical protein
0.8817

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNB RNB domain; This domain is the catalytic domain of ribonuclease II. cl19762 320.013 1.26E-99 597 - 965 specific 250123
RNB superfamily RNB domain; This domain is the catalytic domain of ribonuclease II. - 320.013 1.26E-99 597 - 965 superfamily 268115
VacB Exoribonuclease R [Transcription] - 354.005 2.65E-107 456 - 1073 multi-dom 223631

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26775 PHATRDRAFT_26775 204984 178610 Not available Cre03.g208100.t1.1 AT1G77680.1 472843

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0004540 GO:0000175 GO:0004534 GO:0016896 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004540

ribonuclease activity

Details: 
Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
GO Category: 
MF

GO:0000175

3'-5'-exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of an RNA molecule.
GO Category: 
MF

GO:0004534

5'-3' exoribonuclease activity

Details: 
Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of an RNA molecule.
GO Category: 
MF

GO:0016896

exoribonuclease activity, producing 5'-phosphomonoesters

Details: 
Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
GO Category: 
MF

Add comment

Log in to post comments