13089 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13089 chr_2 Uup 651560 654013 - Uup

Synonyms

NCBI ID Ensembl Genomes exon ID
7450187 Thaps13089.1, Thaps13089.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0481

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0154
 0.36

Most Highly Correlated Transcripts

bd739

(bd739) NA
0.9169

bd1802

(bd1802) NA
0.9159

22960

hypothetical protein
0.8789

7335

hypothetical protein
0.8686

bd1891

(bd1891) COG3899
0.8661

269258

hypothetical protein
0.8501

bd1877

(bd1877) NA
0.8463

bd1803

(bd1803) NA
0.8453

39824

(HSP104) chaperone_ClpB
0.841

bd895

(bd895) NA
0.8398

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 127.565 6.46E-34 189 - 419 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 127.565 6.46E-34 189 - 419 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 127.565 6.46E-34 189 - 419 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 127.565 6.46E-34 189 - 419 superfamily 266551
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 428.978 6.07E-141 189 - 742 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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