13224 (pabA) PABP-1234
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13224 chr_22 (pabA) PABP-1234 744354 746659 + PABP-1234

Synonyms

NCBI ID Ensembl Genomes exon ID
7443930 Thaps13224.4, Thaps13224.3, Thaps13224.1, Thaps13224.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0110
 0.24

Most Highly Correlated Transcripts

31710

RIO1_euk
0.8801

13982

SrmB
0.8753

262091

eukaryotic translation initiation factor 3, subunit 10
0.8731

38073

NAP
0.871

13578

SrmB
0.87

262722

DEXDc superfamily
0.8643

23336

SRP40_C superfamily
0.8617

268744

SUA5
0.8579

5294

hypothetical protein
0.8571

268486

Glyco_transf_22 superfamily
0.8567

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM1_I_PABPs RNA recognition motif 1 in type I polyadenylate-binding proteins; This subfamily corresponds to the... cl17169 171.178 8.55E-51 35 - 114 specific 240824
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 95.7187 1.16E-23 211 - 295 superfamily 266524
RRM4_I_PABPs RNA recognition motif 4 in type I polyadenylate-binding proteins; This subfamily corresponds to the... cl17169 160.478 5.17E-47 319 - 398 specific 240827
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 95.7187 1.16E-23 211 - 295 superfamily 266524
RRM2_I_PABPs RNA recognition motif 2 found in type I polyadenylate-binding proteins; This subfamily corresponds... cl17169 151.55 7.59E-44 120 - 196 specific 240825
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 95.7187 1.16E-23 211 - 295 superfamily 266524
PABP Poly-adenylate binding protein, unique domain; The region featured in this family is found towards... cl02642 135.373 4.57E-38 567 - 637 specific 250037
PABP superfamily Poly-adenylate binding protein, unique domain; The region featured in this family is found towards... - 135.373 4.57E-38 567 - 637 superfamily 261388
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 95.7187 1.16E-23 211 - 295 superfamily 266524
PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize... - 677.295 0 34 - 637 multi-dom 130689

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23959 PHATRDRAFT_23959 172027 183117 418229 Not available AT1G71770.2 354553

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0003676 GO:0003723 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

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