13308 PLN02948
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13308 chr_3 PLN02948 540440 542450 - PLN02948

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps13308.3, Thaps13308.1, Thaps13308.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0325

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0119
 0.42

Most Highly Correlated Transcripts

21670

hypothetical protein
1

22965

SrmB
0.9476

31928

ATM1
0.9312

6642

hypothetical protein
0.93

34596

WD40
0.9295

22448

hypothetical protein
0.9253

24125

hypothetical protein
0.9237

39062

SpoU
0.9189

23081

NADB_Rossmann superfamily
0.9189

11824

hypothetical protein
0.9145

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] cl00310 268.744 1.65E-86 427 - 586 specific 223119
AIRC superfamily AIR carboxylase; Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-... - 268.744 1.65E-86 427 - 586 superfamily 260343
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 192.826 1.23E-57 130 - 315 superfamily 266590
PLN02948 phosphoribosylaminoimidazole carboxylase - 941.025 0 1 - 593 multi-dom 178534

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25204 PHATRDRAFT_25204 278636 31056 421581 Cre12.g503300.t1.2 AT2G37690.1 510589

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004638 GO:0006189 GO:0009320 -

GO:0004638

phosphoribosylaminoimidazole carboxylase activity

Details: 
Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + 2 H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO(2).
GO Category: 
MF

GO:0006189

'de novo' IMP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
GO Category: 
BP

GO:0009320

phosphoribosylaminoimidazole carboxylase complex

Details: 
A protein complex that possesses phosphoribosylaminoimidazole carboxylase activity.
GO Category: 
CC

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