13378 PRK13762
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13378 chr_7 PRK13762 415019 417619 + PRK13762

Synonyms

NCBI ID Ensembl Genomes exon ID
7448957 Thaps13378.1, Thaps13378.3, Thaps13378.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0284
 0.26

Most Highly Correlated Transcripts

268136

COG1054
0.9354

22448

hypothetical protein
0.9287

bd1807

(bd1807) RRS1 superfamily
0.9276

32395

RNA_pol
0.9262

25139

RRN3 superfamily
0.9261

268766

MdlB
0.9217

34596

WD40
0.9181

35224

Aldo_ket_red
0.9131

22441

hypothetical protein
0.9127

4372

hypothetical protein
0.9116

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Wyosine_form superfamily Wyosine base formation; Some proteins in this family appear to be important in wyosine base... - 69.5525 1.97E-14 579 - 648 superfamily 254917
Wyosine_form superfamily Wyosine base formation; Some proteins in this family appear to be important in wyosine base... - 69.5525 1.97E-14 579 - 648 superfamily 254917
PRK13762 tRNA-modifying enzyme; Provisional - 324.918 6.92E-104 331 - 656 multi-dom 237493

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21682 PHATRDRAFT_21682 202359 241377 426304 Cre14.g623300.t1.2 AT1G75200.1 260361

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0005506 GO:0010181 GO:0016491 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0010181

FMN binding

Details: 
Interacting selectively and non-covalently with FMN, flavin mononucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
GO Category: 
MF

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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